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samtools extract sequence from bam file Code Example
samtools extract sequence from bam file 
# Basic syntax:
# For a BAM file:
samtools view file.bam | cut -f 10 > output.txt

# For a SAM file:
cut -f 10 file.sam > output.txt
Source: seqanswers.com



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Type:
 Code Example
Category:
 Coding
Sub Category:
 Code Example
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